Agentic-J: An AI Agent for Biological Microscopy Image Analysis

Biological image analysis increasingly demands integration across heterogeneous tools, programming environments, and domain knowledge that few researchers can command simultaneously. We present Agentic-J, a containerised, multi-agent AI assistant, primarily for ImageJ/Fiji that enables biologists to specify analysis tasks in natural language, from nuclei segmentation and cell tracking to multi-condition quantification. The agent generates executable scripts organised into a documented project structure, so every analysis decision is traceable and the workflow can be reproduced or shared. The specialised sub-agents handle plugin management, code generation, debugging, quality assurance, and statistical reporting. In this paper we introduce the system's design, demonstrate real biological microscopy image analysis workflows, and detailed the technical implementation.

ChartArena: Benchmarking Chart Parsing across Languages, Scenarios, and Formats

Charts are a primary medium for conveying quantitative and relational information, yet systematically evaluating chart parsing models remains difficult. Existing benchmarks focus on narrow chart types and leave diagrammatic structures such as flowcharts and mind maps largely unaddressed, while models produce outputs in incompatible formats, and datasets rarely include the printed or hand-drawn images encountered in practice. To address these issues, we introduce ChartArena, a comprehensive bilingual benchmark covering eight chart families spanning both numeric charts and diagrammatic structures, each evaluated across three visual scenarios: digital renderings, printed photos, and hand-drawn photos. The dataset is built via a human-agent collaborative annotation pipeline with multi-stage human verification to ensure annotation reliability. To enable fair cross-model comparison, we further design a format-agnostic evaluation protocol that maps heterogeneous outputs into two canonical semantic spaces, a normalized triple view and a directed graph view, and scores them with structure-aware metrics. Through extensive evaluation of 26 leading MLLMs, we observe three consistent findings: (i) frontier proprietary models such as Gemini 3.1 Pro lead overall, yet the strongest open-source systems are rapidly closing the gap; (ii) document parsing models handle numeric charts reasonably but fall sharply behind on diagrammatic structures; and (iii) expert chart parsers remain limited to narrow chart families. Across all models, radar charts and hand-drawn scenarios stay especially challenging. These findings show that ChartArena exposes clear capability gaps and provides a unified foundation for future progress. ChartArena is publicly available at https://github.com/pspdada/ChartArena.

SPACE: Unifying Symmetric and Asymmetric Routing Problems for Generalist Neural Solver

Generalist neural routing solvers have shown great potential in solving diverse vehicle routing problems (VRPs) with a unified model. However, existing solvers are typically limited to symmetric settings or degrade in performance when switching to asymmetric settings due to input inconsistencies or inherent structural differences, substantially limiting their practicality in real-world scenarios that encompass both scenarios. To address this limitation, we define the spatial position of each node based on the relative distances to a specific set of pivots and further propose a Spatial Pivot-Aligned Coordinate-free Embedding (SPACE) framework that unifies node representation and solution generation across symmetric and asymmetric VRPs. Specifically, we construct a bidirectional Frechet representation using a novel furthest pivot sampling strategy to enable invariant node representations across distinct problem settings. Furthermore, we introduce a weight-decomposed adaptive decoding mechanism that decouples geometric perception from problem representations, mitigating the overfitting of constraint decisions to a specific geometry setting. Extensive experiments on 110 VRP variants, comprising 55 symmetric problems and their asymmetric counterparts, demonstrate that SPACE achieves promising zero-shot generalization in both symmetric and asymmetric VRPs.

Masked Next-Scale Prediction for Self-supervised Scene Text Recognition

Scene Text Recognition requires modeling visual structures that evolve from coarse layouts to fine-grained character strokes. Training such models relies on large amounts of annotated data. Recent self-supervised approaches, such as Masked Image Modeling (MIM), alleviate this dependency by leveraging large-scale unlabeled data. Yet most existing MIM methods operate at a single spatial scale and fail to capture the hierarchical nature of scene text. In this work, we introduce Masked Next-Scale Prediction (MNSP), a unified self-supervised framework designed to explicitly model cross-scale structural evolution. The framework incorporates Next-Scale Prediction (NSP), which learns hierarchical representations by predicting higher-resolution features from lower-resolution contexts. Naive scale prediction, however, tends to produce spatially diffuse attention, directing the model toward background regions rather than textual structures. MNSP resolves this limitation by jointly learning cross-scale prediction and masked image reconstruction. NSP captures global layout priors across resolutions, while masked reconstruction imposes strong local constraints that guide attention toward informative text regions. A Multi-scale Linguistic Alignment module further maintains semantic consistency across different resolutions. Extensive experiments demonstrate that MNSP achieves state-of-the-art performance, reaching 86.2\% average accuracy on the challenging Union14M benchmark and 96.7\% across six standard datasets. Additional analyses show that our method improves robustness under extreme scale and layout variations. Code is available at https://github.com/CzhczhcHczh/MNSP

StyleTextGen: Style-Conditioned Multilingual Scene Text Generation

Style-conditioned scene text generation faces unique challenges in extracting precise text styles from complex backgrounds and maintaining fine-grained style consistency across characters, especially for multilingual scripts. We propose StyleTextGen, a novel framework that learns to perceive and replicate visual text styles across different languages and writing systems. Our approach features three key contributions: First, we introduce a dual-branch style encoder dedicated to style modeling, yielding robust multilingual text style representations in complex real-world scenes. Second, we design a text style consistency loss that enhances style coherence and improves overall visual quality. Third, we develop a mask-guided inference strategy that ensures precise style alignment between generated and reference text. To facilitate systematic evaluation, we construct StyleText-CE, a bilingual scene text style benchmark covering both monolingual and cross-lingual settings. Extensive experiments demonstrate that StyleTextGen significantly outperforms existing methods in style consistency and cross-lingual generalization, establishing new state-of-the-art performance in multilingual style-conditioned text generation.

Mechanistic Interpretability of ASR models using Sparse Autoencoders

Understanding the internal machinations of deep Transformer-based NLP models is more crucial than ever as these models see widespread use in various domains that affect the public at large, such as industry, academia, finance, health. While these models have advanced rapidly, their internal mechanisms remain largely a mystery. Techniques such as Sparse Autoencoders (SAE) have emerged to understand these mechanisms by projecting dense representations into a sparse vector. While existing research has demonstrated the viability of the SAE in interpreting text-based Large Language Models (LLMs), there are no equivalent studies that demonstrate the application of a SAE to audio processing models like Automatic Speech Recognizers (ASRs). In this work, a SAE is applied to Whisper, a Transformer-based ASR, training a high-dimensional sparse latent space on frame-level embeddings extracted from the Whisper encoder. Our work uncovers diverse monosemantic features across linguistic and non-linguistic boundaries, and demonstrates cross-lingual feature steering. This work establishes the viability of a SAE model and demonstrates that Whisper encodes a rich amount of linguistic information.

Chronicles-OCR: A Cross-Temporal Perception Benchmark for the Evolutionary Trajectory of Chinese Characters

Vision Large Language Models (VLLMs) have achieved remarkable success in modern text-rich visual understanding. However, their perceptual robustness in the face of the continuous morphological evolution of historical writing systems remains largely unexplored. Existing ancient text datasets typically focus on isolated historical periods, failing to capture the systematic visual distribution shifts spanning thousands of years. To bridge this gap and empower Digital Humanities, we introduce Chronicles-OCR, the first comprehensive benchmark specifically designed to evaluate the cross-temporal visual perception capabilities of VLLMs across the complete evolutionary trajectory of Chinese characters, known as the Seven Chinese Scripts. Curated in collaboration with top-tier institutional domain experts, the dataset comprises 2,800 strictly balanced images encompassing highly diverse physical media, ranging from tortoise shells to paper-based calligraphy. To accommodate the drastic morphological and topological variations across different historical stages, we propose a novel Stage-Adaptive Annotation Paradigm. Based on this, Chronicles-OCR formulates four rigorous quantitative tasks: cross-period character spotting, fine-grained archaic character recognition via visual referring, ancient text parsing, and script classification. By isolating visual perception from semantic reasoning, Chronicles-OCR provides an authoritative platform to expose the limitations of current VLLMs, paving the way for robust, evolution-aware historical text perception. Chronicles-OCR is publicly available at https://github.com/VirtualLUOUCAS/Chronicles-OCR.

Rethinking Constraint Awareness for Efficient State Embedding of Neural Routing Solver

Heavy-Encoder-Light-Decoder (HELD) neural routing solvers have emerged as a promising paradigm due to their broad applicability across multiple vehicle routing problems (VRPs). However, they typically struggle with VRP variants with complex constraints. To address this limitation, this paper systematically revisits existing neural solvers from the perspective of the generation mechanism for state embeddings (i.e., query vector prior to compatibility calculation) during decoding. We identify that current mechanisms restrict the observation space during attention computation, introducing a key bottleneck to achieving high-quality solutions. Through detailed empirical analysis, we demonstrate the necessity of preserving a global observation space. To overcome the constraint-agnostic drawback inherent to global observation spaces, we propose a simple yet powerful Constraint-Aware Residual Modulation (CARM) module. By adaptively modulating the context embedding with constraint-relevant variables, CARM effectively enhances constraint awareness, enabling the neural solver to fully leverage the global observation space and generate an efficient state embedding. Extensive experimental results across two single-task and five multi-task neural routing solvers confirm that the CARM module consistently boosts baseline performance. Notably, solvers equipped with our CARM achieve substantial improvements in scaling to large-scale instances and in generalizing to unseen VRP variants. These findings provide valuable insights for the architectural design of neural routing solvers.

CGC: Compositional Grounded Contrast for Fine-Grained Multi-Image Understanding

Although Multimodal Large Language Models (MLLMs) have advanced rapidly, they still face notable challenges in fine-grained multi-image understanding, often exhibiting spatial hallucination, attention leakage, and failures in object constancy. In addition, existing approaches typically rely on expensive human annotations or large-scale chain-of-thought (CoT) data generation. We propose Compositional Grounded Contrast (abbr. CGC), a low-cost full framework for boosting fine-grained multi-image understanding of MLLMs. Built on existing single-image grounding annotations, CGC constructs compositional multi-image training instances through Inter-Image Contrast and Intra-Image Contrast, which introduce semantically decoupled distractor contexts for cross-image discrimination and correlated cross-view samples for object constancy, respectively. CGC further introduces a Rule-Based Spatial Reward within the GRPO framework to improve source-image attribution, spatial alignment, and structured output validity under a Think-before-Grounding paradigm. Experiments show that CGC achieves state-of-the-art results on fine-grained multi-image benchmarks, including MIG-Bench and VLM2-Bench. The learned multi-image understanding capability also transfers to broader multimodal understanding and reasoning tasks, yielding consistent gains over the Qwen3-VL-8B base model on MathVista (+2.90), MuirBench (+2.88), MMStar (+1.93), MMMU (+1.77), and BLINK (+1.69).

Towards Real-World Document Parsing via Realistic Scene Synthesis and Document-Aware Training

Document parsing has recently advanced with multimodal large language models (MLLMs) that directly map document images to structured outputs. Traditional cascaded pipelines depend on precise layout analysis and often fail under casually captured or non-standard conditions. Although end-to-end approaches mitigate this dependency, they still exhibit repetitive, hallucinated, and structurally inconsistent predictions - primarily due to the scarcity of large-scale, high-quality full-page (document-level) end-to-end parsing data and the lack of structure-aware training strategies. To address these challenges, we propose a data-training co-design framework for robust end-to-end document parsing. A Realistic Scene Synthesis strategy constructs large-scale, structurally diverse full-page end-to-end supervision by composing layout templates with rich document elements, while a Document-Aware Training Recipe introduces progressive learning and structure-token optimization to enhance structural fidelity and decoding stability. We further build Wild-OmniDocBench, a benchmark derived from real-world captured documents for robustness evaluation. Integrated into a 1B-parameter MLLM, our method achieves superior accuracy and robustness across both scanned/digital and real-world captured scenarios. All models, data synthesis pipelines, and benchmarks will be publicly released to advance future research in document understanding.